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Payroll configuration

The company-wide payroll settings in two tabs: General settings (PF or SSF, gratuity, CIT, tax limits, loans, how absence is treated) and Ledger settings (the accounts the payroll journal posts to). Set once before the first pay run.

  • HR & payroll Payroll setup
  • 5 min read
  • Updated October 20, 2026

For Payroll officer Accountant Administrator

The idea

Payroll configuration (Payroll › Payroll configuration) holds what is the same for every employee. Each employee's own choices (PF yes or no, CIT, bank) are on their Payroll details (An employee's payroll details). The page has two tabs, and one Save.

General settings

SettingWhat it does
PF or SSFChoose PF Based or SSF Based. A company uses one of them. Changing it clears the account number and the two percentages
PF/SSF account noTick the box in front to enter the PF or SSF details: the account number (required when ticked) and the two percentages below
Company contribution PF/SSF and Employee contribution PF/SSFThe company's and the employee's percentage of salary. Up to two decimals; not more than 50
Gratuity account no, Company contribution gratuity, Employee contribution gratuityTick the box to switch monthly gratuity on, then the account and the two percentages
Citizen investment trust A/C noTick the box to switch CIT on. The amount is set per employee
Salary based onWhether the salary comes from each designation's salary table (the "designation setting") or from each employee's own salary (the "employee setting")
Designation levelHow designations are structured: Designation; Designation and Level; or Designation, Level and Shreni
Insurance relief amount annual and Medical insurance relief amount annualThe most insurance premium that reduces an employee's taxable income in a year
TDS percentageThe percentage taken on allowances marked as TDS-able. Not more than 15
Max overtime hour in a dayThe most overtime hours one request may ask per day
Pay dayThe day of the month salary is paid
Loan (Max no of salary month)An advance cannot be more than this many months of basic salary
Medical tax discountThe yearly limit of the medical tax discount
Attendance based payroll systemWhen ticked, salary is reduced for late, early-out and absent days that the payroll officer selects (Absence, unpaid leave and attendance in payroll)
Deduct unpaid leave salaryWhen ticked, each day of approved unpaid leave is taken off salary
Include Absence SalaryShows the absent days as a deduction line on the payslip, instead of lowering the salary line
Apply Leave Impact to PF/SSFWhen ticked, PF, SSF and gratuity are worked out on the salary after leave and absence is taken off

The Max tax relief amount, the Max tax relief percentage and the Medical tax discount shown in the grey note at the top are set when your company is set up and cannot be changed on this page; changing them needs Penahak support.

The screen refuses a contribution above 50 and a TDS percentage above 15. Ticking Attendance based payroll system or Deduct unpaid leave salary shows a notice that explains the effect.

Ledger settings

The payroll journal (What payroll posts to Accounting) posts to the accounts you choose here. Choose a ledger for each: Gross salary, Provident fund add, Leave salary, Gratuity add, Employee net salary, Citizen investment trust less, Provident fund less, Gratuity less, Social security tax ledger, Salary income tax, Salary TDS, Salary advance, Salary loan, Interest on loan and Provident fund loan.

Also choose an Allowance group and a Deduction group: the account groups under which Penahak creates a ledger for each payroll item you add (Payroll items: the allowances and deductions you can use). Set both before adding payroll items.

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